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Barry Smith
Barry Smith
Professor of Philosophy, Biomedical Informatics, and Computer Science, University at Buffalo
Verified email at buffalo.edu - Homepage
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Cited by
Year
Diagnostic Criteria for Temporomandibular Disorders (DC/TMD) for clinical and research applications
E Schiffman, R Ohrbach, E Truelove, J Look, G Anderson, JP Goulet, ...
Journal of Oral & Facial Pain & Headache 28 (1), 6-27, 2014
4122*2014
The OBO Foundry: Coordinated evolution of ontologies to support biomedical data integration
B Smith, M Ashburner, C Rosse, J Bard, W Bug, W Ceusters, LJ Goldberg, ...
Nature Biotechnology 25 (11), 1251-1255, 2007
31572007
Relations in biomedical ontologies
B Smith, W Ceusters, B Klagges, J Köhler, A Kumar, J Lomax, C Mungall, ...
Genome Biology http://genomebiology.com/2005/6/5/R46 6 (5), R46, 2005
13952005
Building Ontologies with Basic Formal Ontology
R Arp, B Smith, AD Spear
Cambridge, Mass.: MIT Press, 2015
12612015
Bioportal: Ontologies and integrated data resources at the click of the mouse
PL Whetzel, NH Shah, NF Noy, B Dai, M Dorf, N Griffith, C Jonquet, ...
ICBO 2009: Proceedings of the First International Conference on Biomedical …, 2009
1178*2009
Ontology
B Smith
The furniture of the world, 47-68, 2012
11032012
SNAP and SPAN: Towards dynamic spatial ontology
P Grenon, B Smith
Spatial Cognition and Computation 4 (1), 69-104, 2004
9422004
Truth-makers
K Mulligan, P Simons, B Smith
Philosophy and Phenomenological Research 44 (3), 287-321, 1984
8011984
Austrian Philosophy. The Legacy of Franz Brentano
B Smith
Open Court, 1994
7881994
Promoting coherent minimum reporting guidelines for biological and biomedical investigations: The MIBBI project
CF Taylor, D Field, SA Sansone, J Aerts, R Apweiler, M Ashburner, ...
Nature Biotechnology 26 (8), 889-896, 2008
6352008
ImmPort: Toward repurposing of open access immunological assay data for translational and clinical research
S Bhattacharya, P Dunn, C Thomas, B Smith, H Schaefer, J Chen, Z Hu, ...
Scientific Data 5, 180015, 2018
5642018
Fiat and bona fide boundaries
B Smith, A Varzi
Philosophy and Phenomenological Research 60, 401-420, 2000
5642000
The Cambridge Companion to Husserl
B Smith, DW Smith
Cambridge University Press, 1995
5361995
Biodynamic ontology: Applying BFO in the biomedical domain
P Grenon, B Smith, L Goldberg
Studies in Health and Technology Informatics 102, 20-38, 2004
525*2004
Beyond concepts: Ontology as reality representation
B Smith
Proceedings of the Third International Conference on Formal Ontology in …, 2004
5212004
Fiat objects
B Smith
Topoi 20 (2), 131-148, 2001
520*2001
Mereotopology: A theory of parts and boundaries
B Smith
Data & Knowledge Engineering 20 (3), 287-303, 1996
5071996
Geographical categories: An ontological investigation
B Smith, DM Mark
International Journal of Geographical Information Science 15 (7), 591-612, 2001
4902001
Ontology: Towards a new synthesis
B Smith, C Welty
Formal Ontology in Information Systems 10 (3), 3-9, 2001
474*2001
Ontology and geographic kinds
B Smith, DM Mark
Proceedings of the 8th International Symposium on Spatial Data Handling (SDH …, 1998
4611998
Ontological realism: A methodology for coordinated evolution of scientific ontologies
B Smith, W Ceusters
Applied ontology 5 (3-4), 139-188, 2010
4192010
Do mountains exist? Towards an ontology of landforms
B Smith, D Mark
Environment and Planning B (Planning and Design) 30 (3), 411-427, 2003
4032003
Parts and Moments: Studies in Logic and Formal Ontology
B Smith
Munich: Philosophia Verlag, 1982
3931982
Foundations of Gestalt Theory
B Smith (ed.)
Munich: Philosophia, 1988
372*1988
The Ontology for Biomedical Investigations
A Bandrowski, R Brinkman, M Brochhausen, MH Brush, B Bug, ...
PLoS ONE 11 (4), 2016
3632016
Toward an ontological treatment of disease and diagnosis
RH Scheuermann, W Ceusters, B Smith
AMIA Summit on Translational Bioinformatics. Proceedings, 116-120, 2009
3572009
On Disgust
A Kolnai, C Korsmeyer, B Smith
Open Court, 2004
3472004
On drawing lines on a map
B Smith
Spatial Information Theory. A Theoretical Basis for GIS, 475-484, 1995
3471995
Modeling biomedical experimental processes with OBI
RR Brinkman, M Courtot, D Derom, JM Fostel, Y He, P Lord, J Malone, ...
Journal of Biomedical Semantics 1 (S7), 2010
3262010
The Environment Ontology: Contextualising biological and biomedical entities.
PL Buttigieg, N Morrison, B Smith, CJ Mungall, SE Lewis
J. Biomedical Semantics 4, 43, 2013
3182013
The construction of social reality: An exchange
B Smith, J Searle
American Journal of Economics and Sociology 62 (1), 285-309, 2003
295*2003
The ontology of the Gene Ontology
B Smith, J Williams, S Schulze-Kremer
AMIA Annual Symposium Proceedings, 609-613, 2003
2922003
The evaluation of ontologies: Toward improved semantic interoperability
L Obrst, W Ceusters, I Mani, S Ray, B Smith
Semantic Web: Revolutionizing Knowledge Discovery in the Life Sciences, 139-158, 2007
2802007
A theory of granular partitions
T Bittner, B Smith
Foundations of Geographic Information Science, 117-151, 2003
2782003
John Searle: From speech acts to social reality
B Smith
John Searle, 1-33, 2003
2752003
Basic concepts of formal ontology
B Smith
Formal Ontology in Information Systems, 19-28, 1998
2701998
National Center for Biomedical Ontology
MA Musen, NF Noy, NH Shah, PL Whetzel, CG Chute, MA Story, B Smith
Journal of the American Medical Informatics Association 19 (2), 190-195, 2012
2652012
Ontology and geographic objects: An empirical study of cognitive categorization
DM Mark, B Smith, B Tversky
Spatial Information Theory. Cognitive and Computational Foundations of …, 1999
2511999
Towards a history of speech act theory
B Smith
Speech Acts, Meaning, and Intentions: Critical Approaches to the Philosophy …, 1990
2471990
Gene Ontology annotations: What they mean and where they come from
DP Hill, B Smith, MS McAndrews-Hill, JA Blake
BMC Bioinformatics 9 (Suppl 5), S2, 2008
2342008
Formal ontology, common sense and cognitive science
B Smith
International journal of human-computer studies 43 (5-6), 641-667, 1995
2301995
Finding our way through phenotypes
R Deans, SE Lewis, E Huala, SS Anzaldo, M Ashburner, JP Balhoff, ...
PLoS Biology 13 (1), 2015
2292015
Ontology
B Smith
The Blackwell Guide to the Philosophy of Computing and Information, 153-166, 2003
222*2003
National Center for Biomedical Ontology: Advancing biomedicine through structured organization of scientific knowledge
DL Rubin, SE Lewis, CJ Mungall, S Misra, M Westerfield, M Ashburner, ...
Omics: a journal of integrative biology 10 (2), 185-198, 2006
221*2006
The cornucopia of formal‐ontological relations
B Smith, P Grenon
Dialectica 58 (3), 279-296, 2004
2162004
Towards a reference terminology for ontology research and development in the biomedical domain.
B Smith, W Kusnierczyk, D Schober, W Ceusters
KR-MED: Biomedical Ontology in Action, Baltimore, MD, 57-65, 2006
2152006
Ontological tools for geographic representation
R Casati, B Smith, A Varzi
Formal Ontology in Information Systems, 77-85, 1998
2141998
Sämtliche Werke. Textkritische Ausgabe mit Kommentar
A Reinach, K Schuhmann, B Smith
Philosophia, 1989
207*1989
The role of foundational relations in the alignment of biomedical ontologies
B Smith, C Rosse
Medinfo 11 (1), 444-8, 2004
2002004
Function, role and disposition in Basic Formal Ontology
R Arp, B Smith
Proceedings of Bio-Ontologies Workshop (Intelligent Systems for Molecular …, 2008
1972008
Sixteen days
B Smith, B Brogaard
The Journal of Medicine and Philosophy 28 (1), 45-78, 2003
1962003
A terminological and ontological analysis of the NCI Thesaurus
W Ceusters, B Smith, L Goldberg
Methods of Information in Medicine 44 (4), 498, 2005
1942005
Philosophical Investigations on Space, Time and the Continuum
F Brentano, B Smith
Croom Helm (repr. Routledge 2009), 1988
190*1988
Pieces of a theory
B Smith, K Mulligan
Parts and Moments. Studies in Logic and Formal Ontology, 15–109, 1982
1881982
The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics
L Cooper, A Meier, MA Laporte, JL Elser, C Mungall, BT Sinn, D Cavaliere, ...
Nucleic Acids Research 46 (D1), D1168–D1180, 2018
1852018
Aristotle, Menger, Mises: An essay in the metaphysics of economics
B Smith
History of Political Economy, Annual Supplement 22, 263-288, 1990
1851990
HL7 RIM: An incoherent standard
B Smith, W Ceusters
Studies in Health Technology and Informatics 124 (Proceedings of MIE 2006 …, 2006
1822006
Against fantology
B Smith
Experience and Analysis, 153-170, 2005
1822005
The Plant Ontology as a tool for comparative plant anatomy and genomic analyses
L Cooper, RL Walls, J Elser, MA Gandolfo, DW Stevenson, B Smith, ...
Plant and Cell Physiology, 2012
1792012
Truthmaker realism
B Smith
Australasian Journal of Philosophy 77 (3), 274-291, 1999
1791999
Gestalt theory: An essay in philosophy
B Smith
Foundations of Gestalt Theory, 11-81, 1988
1791988
Semantics in support of biodiversity knowledge discovery: An introduction to the Biological Collections Ontology and related ontologies
RL Walls, J Deck, R Guralnick, S Baskauf, R Beaman, S Blum, S Bowers, ...
PloS one 9 (3), e89606, 2014
1762014
Boundaries: An essay in mereotopology
B Smith
The Philosophy of Roderick M. Chisolm, 533-561, 1997
1751997
The Protein Ontology: A structured representation of protein forms and complexes
DA Natale, CN Arighi, WC Barker, JA Blake, CJ Bult, M Caudy, ...
Nucleic acids research 39 (suppl 1), D539-D545, 2011
1742011
Naïve physics: An essay in ontology
R Casati, B Smith
Philosophical Psychology 7 (2), 225-244, 1994
170*1994
The ontology-epistemology divide: A case study in medical terminology
O Bodenreider, B Smith, A Burgun
Formal Ontology in Information Systems: Proceedings of the Third …, 2004
1612004
The niche
B Smith, AC Varzi
Noûs 33 (2), 214-238, 1999
1591999
True grid
B Smith
Spatial Information Theory. Foundations of Geographic Information Science …, 2001
158*2001
Applied Ontology: An Introduction
K Munn, B Smith
ontos verlag / de Gruyter, Frankfurt, 2008
155*2008
GOL: A general ontological language
W Degen, B Heller, H Herre, B Smith
Formal Ontology in Information Systems (FOIS 2001), 34-46, 2001
154*2001
Handbook of Metaphysics and Ontology
H Burkhardt, B Smith
Philosophia Verlag, 1991
151*1991
Aboutness: Towards foundations for the Information Artifact Ontology
B Smith, W Ceusters
Proceedings of the Sixth International Conference on Biomedical Ontology …, 2015
149*2015
On the application of formal principles to life science data: A case study in the Gene Ontology
B Smith, J Köhler, A Kumar
International Workshop on Data Integration in the Life Sciences, 79-94, 2004
1482004
Ontological foundations for geographic information science
D Mark, B Smith, M Egenhofer, S Hirtle
UCGIS Emerging Research Themes: A Research Agenda for Geographic Information …, 2004
1462004
Infectious Disease Ontology
LG Cowell, B Smith
Infectious Disease Informatics, 373-395, 2010
1422010
Ontology with human subjects testing: An empirical investigation of geographic categories
B Smith, D Mark
American Journal of Economics and Sociology 58 (2), 245-312, 1998
1421998
CIDO, a community-based ontology for coronavirus disease knowledge and data integration, sharing, and analysis
Y He, H Yu, E Ong, Y Wang, Y Liu, A Huffman, H Huang, J Beverley, J Hur, ...
Scientific data 7 (1), 181, 2020
1412020
Austrian Economics: Historical and Philosophical Background
W Grassl, B Smith
Croom Helm (repr. Routledge 2010), 1986
141*1986
Fiat and bona fide boundaries: Towards an ontology of spatially extended objects
B Smith, AC Varzi
International conference on spatial information theory, 103-119, 1997
1381997
Austrian economics and Austrian philosophy
B Smith
Austrian Economics: Historical and Philosophical Background, 1-36, 1986
136*1986
Mistakes in medical ontologies: Where do they come from and how can they be detected?
W Ceusters, B Smith, A Kumar, C Dhaen
Studies in Health and Technology Informatics 102, 145–164, 2004
1352004
OAE: The Ontology of Adverse Events
Y He, S Sarntivijai, Y Lin, Z Xiang, A Guo, S Zhang, D Jagannathan, ...
Journal of Biomedical Semantics 5 (1), 29, 2014
1332014
From concepts to clinical reality: An essay on the benchmarking of biomedical terminologies
B Smith
Journal of Biomedical Informatics 39 (3), 288-298, 2006
1322006
Ontology-based error detection in SNOMED-CT®.
W Ceusters, B Smith, A Kumar, C Dhaen
Medinfo 11, 482-486, 2004
1322004
Strategies for referent tracking in electronic health records
W Ceusters, B Smith
Journal of biomedical informatics 39 (3), 362-378, 2006
1302006
OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies.
R Jackson, N Matentzoglu, JA Overton, R Vita, JP Balhoff, PL Buttigieg, ...
Database 2021, baab069, 2021
1292021
Strengths and limitations of formal ontologies in the biomedical domain
S Schulz, H Stenzhorn, M Boeker, B Smith
Electronic Journal of Communication, Information and Innovation in Health 3 …, 2009
1272009
CARO: The Common Anatomy Reference Ontology
MA Haendel, F Neuhaus, D Osumi-Sutherland, PM Mabee, JLV Mejino Jr, ...
Anatomy Ontologies for Bioinformatics: Principles and Practice, 327-349, 2008
1272008
Logic and formal ontology
B Smith
Husserl's Phenomenology: A Textbook, 29-67, 1989
127*1989
Ontology and medical terminology: Why description logics are not enough
W Ceusters, B Smith, J Flanagan
Proceedings of the Conference: Towards an Electronic Patient Record, 1-10, 2003
1262003
On substances, accidents and universals: In defence of a constituent ontology
B Smith
Philosophical Papers 26 (1), 105-127, 1997
1251997
Foundations for a realist ontology of mental disease
W Ceusters, B Smith
Journal of Biomedical Semantics 1 (10), 1-23, 2010
1242010
The logic of biological classification and the foundations of biomedical ontology
B Smith
Logic, Methodology and Philosophy of Science. Proceedings of the 12th …, 2005
1242005
Document acts
B Smith
in A Konzelmann-Ziv, HB Schmid (eds.), 2013. Institutions, Emotions, and …, 2013
122*2013
Survey-based naming conventions for use in OBO Foundry ontology development
D Schober, B Smith, SE Lewis, W Kusnierczyk, J Lomax, C Mungall, ...
BMC bioinformatics 10, 1-9, 2009
120*2009
A relational theory of the act
K Mulligan, B Smith
Topoi 5 (2), 115-130, 1986
1191986
Framework for formal ontology
B Smith, K Mulligan
Topoi 2 (1), 73-85, 1983
1191983
Investigating subsumption in SNOMED CT: An exploration into large description logic-based biomedical terminologies
O Bodenreider, B Smith, A Kumar, A Burgun
Artificial intelligence in medicine 39 (3), 183-195, 2007
1162007
John Searle
B Smith (ed.)
Cambridge University Press, 2003
113*2003
Ontologies as integrative tools for plant science
RL Walls, B Athreya, L Cooper, J Elser, MA Gandolfo, P Jaiswal, ...
American Journal of Botany 99 (8), 1263-1275, 2012
1092012
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